Theoretical Immunology Laboratory

 

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Data

• CFSE data (published by Deenick et al. 2003 J Immunol)

• Data on migration of 51Cr-labeled thoracic duct lymphocytes (published by Smith and Ford Immunology 1983)

• Data on Mtb replication in mice (published by Gill et al. Nat Med 2009)

Mathematica

• Notebook for fitting CFSE data using Deenick et al. mathematical model (published in De Boer et al. BMB 2006)

• Notebook for fitting BrdU data using dilution model (published in Ganusov and De Boer J Roy Soc Interface 2012)

 

R

• Code for fitting ODE models to data

• Statistical tests (F-test, AIC) to be used with modFit function in FME package

 

Python

• Code for fitting ODE models to data (thanks to Elizabeth Johnson)